Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs11600543 chr11:65298939 G/A 1.93E-5 399 16.97 20.13 3.3 KM Plot
BLCA rs11920002 chr3:131616345 C/T 1.59E-7 401 17.03 21.23 2.93 KM Plot
BLCA rs11952099 chr5:131576772 A/G 1.05E-5 400 21.37 17.4 14.37 KM Plot
BLCA rs11980318 chr7:127283406 A/T 8.36E-6 405 18.02 16.5 9.88 KM Plot
BLCA rs12427505 chr13:25834243 T/C 4.1E-8 404 17.87 17.53 5.13 KM Plot
BLCA rs12427761 chr13:25840828 T/C 4.79E-8 401 17.57 17.53 5.13 KM Plot
BLCA rs12430251 chr13:25849146 T/G 2.89E-8 397 17.87 17.53 5.13 KM Plot
BLCA rs12430431 chr13:25830951 T/C 4.1E-8 404 17.87 17.53 5.13 KM Plot
BLCA rs12430741 chr13:25841308 C/A 4.1E-8 404 17.87 17.53 5.13 KM Plot
BLCA rs12431091 chr13:25860926 G/C 5.69E-13 398 17.87 18.62 4.97 KM Plot
BLCA rs13122139 chr4:41931781 A/G 0 393 16.92 20.23 0.67 KM Plot
BLCA rs13154653 chr5:3518916 C/A 9.1E-6 404 17.4 19.92 4.37 KM Plot
BLCA rs13157404 chr5:3473854 C/T 1.04E-5 403 17.4 19.4 4.37 KM Plot
BLCA rs13162816 chr5:3497691 C/T 9.61E-6 404 17.4 19.92 4.37 KM Plot
BLCA rs13166953 chr5:3472213 A/G 1.04E-5 403 17.4 19.4 4.37 KM Plot